Publications of Robert H. S. Kraus

Jax, E.; Werner, E.; Müller, I.; Schaerer, B.; Kohn, M.; Olofsson, J.; Waldenstrom, J.; Kraus, R. H. S.; Hartle, S.: Evaluating effects of AIV infection status on ducks using a flow cytometry-based differential blood count. Microbiology Spectrum 11, e04351-22 (2023)

Karawita, A. C.; Cheng, Y. Y.; Chew, K. Y.; Challagulla, A.; Kraus, R. H. S.; Mueller, R. C.; Tong, M. Z. W.; Hulme, K. D.; Bielefeldt-Ohmann, H.; Steele, L. E. et al.; Wu, M. L. N.; Sng, J.; Noye, E.; Bruxner, T. J.; Au, G. G.; Lowther, S.; Blommaert, J.; Suh, A.; McCauley, A. J.; Kaur, P.; Dudchenko, O.; Aiden, E.; Fedrigo, O.; Formenti, G.; Mountcastle, J.; Chow, W.; Martin, F. J.; Ogeh, D. N.; Thiaud-Nissen, F.; Howe, K.; Tracey, A.; Smith, J.; Kuo, R. C. I.; Renfree, M. B.; Kimura, T.; Sakoda, Y.; McDougall, M.; Spencer, H. G.; Pyne, M.; Tolf, C.; Waldenstroem, J.; Jarvis, E. D.; Baker, M. L.; Burt, D. W.; Short, K. R.: The swan genome and transcriptome, it is not all black and white. Genome Biology 24, 13 (2023)

Lavretsky, P.; Mohl, J. E.; Soderquist, P.; Kraus, R. H. S.; Schummer, M. L.; Brown, J. I.: The meaning of wild: Genetic and adaptive consequences from large-scale releases of domestic mallards. Communications Biology 6 (1), 819 (2023)

Naguib, M. M.; Eriksson, P.; Jax, E.; Wille, M.; Lindskog, C.; Brojer, C.; Krambrich, J.; Waldenstrom, J.; Kraus, R. H. S.; Larson, G. et al.; Lundkvist, A.; Olsen, B.; Jarhult, J. D.; Ellstrom, P.: A comparison of host responses to infection with wild-type avian influenza viruses in chickens and tufted ducks. Microbiology Spectrum 11 (4), e02586-22 (2023)

Jax, E.; Franchini, P.; Sekar, V.; Ottenburghs, J.; Parera, D. M.; Kellenberger, R. T.; Magor, K. E.; Mueller, I.; Wikelski, M.; Kraus, R. H. S.: Comparative genomics of the waterfowl innate immune system. Molecular Biology and Evolution 39 (8), msac160 (2022)

Jax, E.; Mueller, I.; Börno, S.; Borlinghaus, H.; Eriksson, G.; Fricke, E.; Timmermann, B.; Pendl, H.; Fiedler, W.; Klein, K. et al.; Schreiber, F.; Wikelski, M.; Magor, K. E.; Kraus, R. H. S.: Health monitoring in birds using bio‑loggers and whole blood transcriptomics. Scientific Reports 11, 10815 (2021)

Rhie, A.; McCarthy, S. A.; Fedrigo, O.; Damas, J.; Formenti, G.; Koren, S.; Uliano-Silva, M.; Chow, W.; Fungtammasan, A.; Kim, J. et al.; Lee, C.; Ko, B. J.; Chaisson, M.; Gedman, G. L.; Cantin, L. J.; Thibaud-Nissen, F.; Haggerty, L.; Bista, I.; Smith, M.; Haase, B.; Mountcastle, J.; Winkler, S.; Paez, S.; Howard, J.; Vernes, S. C.; Lama, T. M.; Grutzner, F.; Warren, W. C.; Balakrishnan, C. N.; Burt, D.; George, J. M.; Biegler, M. T.; Iorns, D.; Digby, A.; Eason, D.; Robertson, B.; Edwards, T.; Wilkinson, M.; Turner, G.; Meyer, A.; Kautt, A. F.; Franchini, P.; Detrich, H. W.; Svardal, H.; Wagner, M.; Naylor, G. J. P.; Pippel, M.; Malinsky, M.; Mooney, M.; Simbirsky, M.; Hannigan, B. T.; Pesout, T.; Houck, M.; Misuraca, A.; Kingan, S. B.; Hall, R.; Kronenberg, Z.; Sović, I.; Dunn, C.; Ning, Z.; Hastie, A.; Lee, J.; Selvaraj, S.; Green, R. E.; Putnam, N. H.; Gut, I.; Ghurye, J.; Garrison, E.; Sims, Y.; Collins, J.; Pelan, S.; Torrance, J.; Tracey, A.; Wood, J.; Dagnew, R. E.; Guan, D.; London, S. E.; Clayton, D. F.; Mello, C. V.; Friedrich, S. R.; Lovell, P. V.; Osipova, E.; Al-Ajli, F. O.; Secomandi, S.; Kim, H.; Theofanopoulou, C.; Hiller, M.; Zhou, Y.; Harris, R. S.; Makova, K. D.; Medvedev, P.; Hoffman, J.; Masterson, P.; Clark, K.; Martin, F.; Howe, K.; Flicek, P.; Walenz, B. P.; Kwak, W.; Clawson, H.; Diekhans, M.; Nassar, L.; Paten, B.; Kraus, R. H. S.; Crawford, A. J.; Gilbert, M. T. P.; Zhang, G.; Venkatesh, B.; Murphy, R. W.; Koepfli, K.-P.; Shapiro, B.; Johnson, W. E.; Di Palma, F.; Marques-Bonet, T.; Teeling, E. C.; Warnow, T.; Graves, J. M.; Ryder, O. A.; Haussler, D.; O’Brien, S. J.; Korlach, J.; Lewin, H. A.; Howe, K.; Myers, E. W.; Durbin, R.; Phillippy, A. M.; Jarvis, E. D.: Towards complete and error-free genome assemblies of all vertebrate species. Nature 592, pp. 737 - 746 (2021)

Mueller, R. C.; Mallig, N.; Smith, J.; Eoery, L.; Kuo, R. C. I.; Kraus, R. H. S.: Avian Immunome DB: an example of a user-friendly interface for extracting genetic information. BMC Bioinformatics 21, 502 (2020)

Huang, Z. Y.X.; Xu, C.; van Langevelde, F.; Ma, Y.; Langendoen, T.; Mundkur, T.; Si, Y.; Tian, H.; Kraus, R. H. S.; Gilbert, M. et al.; Han, G.; Ji, X.; Prins, H. H.T.; de Boer, W. F.: Contrasting effects of host species and phylogenetic diversity on the occurrence of HPAI H5N1 in European wild birds. Journal of Animal Ecology 88 (7), pp. 1044 - 1053 (2019)

Förster, D. W.; Bull, J. K.; Lenz, D.; Autenrieth, M.; Paijmans, J. L. A.; Kraus, R. H. S.; Nowak, C.; Bayerl, H.; Kühn, R.; Saveljev, A. P. et al.; Sindičić, M.; Hofreiter, M.; Schmidt, K.; Fickel, J.: Targeted re-sequencing of coding DNA sequences for SNP discovery in non-model species. Molecular Ecology Resources 18 (6), pp. 1356 - 1373 (2018)

Jax, E.; Wink, M.; Kraus, R. H. S.: Avian transcriptomics: Opportunities and challenges. Journal of Ornithology 159 (3), pp. 599 - 629 (2018)

Bayerl, H.; Kraus, R. H. S.; Nowak, C.; Förster, D. W.; Fickel, J.; Kühn, R.: Fast and cost-effective single nucleotide polymorphism (SNP) detection in the absence of a reference genome using semi-deep next generation random amplicon sequencing (RAMseq). Molecular Ecology Resources 18 (1), pp. 107 - 117 (2018)

Söderquist, P.; Elmberg, J.; Gunnarsson, G.; Thulin, C.-G.; Champagnon, J.; Guillemain, M.; Kreisinger, J.; Prins, H. H. T.; Crooijmans, R. P. M. A.; Kraus, R. H. S.: Admixture between released and wild game birds: A changing genetic landscape in European mallards (Anas platyrhynchos). European Journal of Wildlife Research 63, 98 (2017)

Ottenburghs, J.; Kraus, R. H. S.; van Hooft, P.; van Wieren, S. E.; Ydenberg, R. C.; Prins, H. H. T.: Avian introgression in the genomic era. BMC Avian Research 8, 30 (2017)

Ottenburghs, J.; Megens, H.-J.; Kraus, R. H. S.; van Hooft, P.; van Wieren, S. E.; Crooijmans, R. P. M. A.; Ydenberg, R. C.; Groenen, M. A. M.; Prins, H. H. T.: A history of hybrids? Genomic patterns of introgression in the True Geese. BMC Evolutionary Biology 17, 201 (2017)

Kraus, R. H. S.: Das B10K Genom-Projekt – eine weltweite Initiative zur Sequenzierung von Vogelgenomen. Jahrbuch - Max-Planck-Gesellschaft (2017)

Engler, J. O.; Kraus, R. H. S.: Digitales Gezwitscher in der Ornithologie: Eine Einführung in den Kurznachrichtendienst Twitter. Vogelwarte - Zeitschrift für Vogelkunde 55 (1), pp. 75 - 80 (2017)

Bagi, Z.; Kraus, R. H. S.; Kusza, S.: A review of the invasive Eurasian collared dove and possible research methods in the future. Balkan Journal of Wildlife Research 4 (2), pp. 1 - 10 (2017)

Chapman, J. R.; Hellgren, O.; Helin, A. S.; Kraus, R. H. S.; Cromie, R. L.; Waldenström, J.: The evolution of innate immune genes: Purifying and balancing selection on β-defensins in waterfowl. Molecular Biology and Evolution 33 (12), pp. 3075 - 3087 (2016)

Smitz, N.; Hooft, P. V.; Heller, R.; Cornélis, D.; Chardonnet, P.; Kraus, R. H. S.; Greyling, B.; Crooijmans, R.; Groenen, M.; Michaux, J.: Genome-wide single nucleotide polymorphism (SNP) identification and characterization in a non-model organism, the African buffalo (Syncerus caffer), using next generation sequencing. Mammalian Biology 81 (6), pp. 595 - 603 (2016)